Pedro Mendes

The systems biology markup language (SBML): a medium forrepresentation and exchange of biochemical network models

Michael Hucka, Andrew Finney, Herbert M. Sauro et al. · Bioinformatics · 2003 · 3.1K citations · Full text

Life Sciences, Bioinformatics, Systems Biology +12

COPASI—a COmplex PAthway SImulator

Stefan Hoops, Sven Sahle, Ralph Gauges et al. · Bioinformatics · 2006 · 2.7K citations · Full text

Engineering, Bioengineering, Systems Biology +14

ChEBI in 2016: Improved services and an expanding collection of metabolites

Janna Hastings, Gareth Owen, Adriano Dekker et al. · Nucleic Acids Research · 2015 · 1.2K citations · Full text

Life Sciences, Biochemistry, Bioinformatics +14

A community-driven global reconstruction of human metabolism

Ines Thiele, Neil Swainston, Ronan M. T. Fleming et al. · Nature Biotechnology · 2013 · 1.1K citations · Full text

Life Sciences, Bioinformatics, Biology +14

Parameter Estimation in Biochemical Pathways: A Comparison of Global Optimization Methods

Carmen G. Moles, Pedro Mendes, Julio R. Banga · Genome Research · 2003 · 872 citations · Full text

Engineering, Bioinformatics, Chemical Engineering +16