Yuzhen Ye

The Ecoresponsive Genome of <i>Daphnia pulex</i>

John K. Colbourne, Michael E. Pfrender, Donald Gilbert et al. · Science · 2011 · 1.2K citations · Full text

Comparative Genomics, Genetics, Molecular Genetics +18

FragGeneScan: predicting genes in short and error-prone reads

Mina Rho, Haixu Tang, Yuzhen Ye · Nucleic Acids Research · 2010 · 874 citations · Full text

Engineering, Genetics, Genomics +19

A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes

Yuzhen Ye, Thomas G. Doak · PLoS Computational Biology · 2009 · 662 citations · Full text

Biological Pathway Reconstruction/inference, Comparative Genomics, Genetics +23

Flexible structure alignment by chaining aligned fragment pairs allowing twists

Yuzhen Ye, Adam Godzik · Bioinformatics · 2003 · 629 citations · Full text

A Core Human Microbiome as Viewed through 16S rRNA Sequence Clusters

Susan M. Huse, Yuzhen Ye, Yanjiao Zhou et al. · PLoS ONE · 2012 · 594 citations · Full text

Dysbiosis, Rrna Sequence Clusters, Oral Microbiology +17