Concepedia

Pairwise Alignment Scoring

Pairwise Alignment Scoring is a computational method in bioinformatics that assigns a quantitative score to the alignment of two biological sequences by evaluating the matches, mismatches, and gaps according to a substitution matrix, thereby distinguishing it from other sequence comparison techniques through its reliance on position-specific scoring derived from evolutionary or physicochemical models.

66

Publications

11.8K

Citations

174

Authors

102

Institutions

Publications per year

2017–2026

8

Parents

Publications

66

Multiple sequence alignment with hierarchical clustering

F. Corpet · Nucleic Acids Research · 1988 · 5.4K citations · Full text

, , +14

SDT: A Virus Classification Tool Based on Pairwise Sequence Alignment and Identity Calculation

Brejnev Muhire, Arvind Varsani, Darren P. Martin · PLoS ONE · 2014 · 1.8K citations · Full text

, , +17

Improved pairwise alignment of genomic dna

Robert S. Harris · 2007 · 903 citations

, , +14

DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment.

Burkhard Morgenstern · Bioinformatics · 1999 · 686 citations · Full text

, , +11

IsoRankN: spectral methods for global alignment of multiple protein networks

Chung-Shou Liao, Kang-Hao Lu, Michael Baym et al. · Bioinformatics · 2009 · 409 citations · Full text

, , +14

1–5 of 66

Authors

174

  1. SR
    Sanjay Ranka

    University of Florida, United States

    2 publications · 31 citations

    2

    h-index

  2. OB
    Olivier Bastien

    Commissariat à l'Énergie Atomique et aux Énergies Alternatives, France

    2 publications · 51 citations

    2

    h-index

  3. MS
    M. S. Madhusudhan

    Indian Institute of Science Education and Research Pune, India

    2 publications · 180 citations

    2

    h-index

  4. XH
    Xiaoqiu Huang

    Iowa State University, United States

    2 publications · 48 citations

    2

    h-index

  5. JL
    Junjie Li

    University of Florida, United States

    2 publications · 31 citations

    2

    h-index

1–5 of 174

Institutions

102

  1. University of Florida

    Gainesville, United States

    4 h-index

    9 publications

    1.9K citations

  2. Pennsylvania State University

    State College, United States

    3 h-index

    7 publications

    1.7K citations

  3. National Institutes of Health

    Bethesda, United States

    3 h-index

    7 publications

    288 citations

  4. Howard Hughes Medical Institute

    Chevy Chase, United States

    3 h-index

    5 publications

    419 citations

  5. Centre National de la Recherche Scientifique

    Paris, France

    3 h-index

    4 publications

    94 citations

  6. National Center for Biotechnology Information

    Bethesda, United States

    3 h-index

    7 publications

    306 citations

  7. University of California, San Francisco

    San Francisco, United States

    3 h-index

    8 publications

    655 citations

  8. Massachusetts Institute of Technology

    Cambridge, United States

    2 h-index

    6 publications

    2.1K citations

1–8 of 102

Venues

  1. Bioinformatics

    12 publications · 1.6K citations

    12

    h-index

  2. BMC Bioinformatics

    7 publications · 235 citations

    7

    h-index

  3. Journal of Computational Biology

    4 publications · 96 citations

    4

    h-index

  4. Nucleic Acids Research

    4 publications · 5.5K citations

    4

    h-index

  5. PLoS ONE

    3 publications · 2.1K citations

    3

    h-index

1–5