Concepedia

Metatranscriptome Assembly

Metatranscriptome Assembly is a computational process in transcriptomics that reconstructs the complete set of RNA transcripts from a mixed microbial community, distinguishing itself from single-organism transcriptome assembly by integrating sequence data derived from multiple coexisting species within an environmental sample.

31

Publications

2.3K

Citations

168

Authors

85

Institutions

Publications per year

2017–2026

21

Parents

Publications

31

Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold

Martin Steinegger, Milot Mirdita, Johannes Söding · Nature Methods · 2019 · 487 citations · Full text

, , +16

Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities

Jack A. Gilbert, Dawn Field, Ying Huang et al. · PLoS ONE · 2008 · 400 citations · Full text

, , +15

ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data

Silas Kieser, Joseph Brown, Evgeny M. Zdobnov et al. · BMC Bioinformatics · 2020 · 205 citations · Full text

, , +17

A comprehensive non-redundant gene catalog reveals extensive within-community intraspecies diversity in the human vagina

Bing Ma, Michael France, Jonathan Crabtree et al. · Nature Communications · 2020 · 195 citations · Full text

, , +17

Ammonium recycling supports toxic Planktothrix blooms in Sandusky Bay, Lake Erie: Evidence from stable isotope and metatranscriptome data

Justyna J. Hampel, Mark J. McCarthy, Michelle J. Neudeck et al. · Harmful Algae · 2018 · 78 citations · Full text

, , +17

1–5 of 31

Authors

168

  1. SK
    Silas Kieser

    University of Geneva, Switzerland

    2 publications · 230 citations

    2

    h-index

  2. FY
    Francis Y. L. Chin

    University of Hong Kong, Hong Kong SAR China

    2 publications · 75 citations

    2

    h-index

  3. LA
    Lee Ann McCue

    Pacific Northwest National Laboratory, United States

    2 publications · 230 citations

    2

    h-index

  4. MM
    Milot Mirdita

    Seoul National University, South Korea

    2 publications · 529 citations

    2

    h-index

  5. MS
    Martin Steinegger

    Seoul National University, South Korea

    2 publications · 529 citations

    2

    h-index

1–5 of 168

Institutions

85

  1. Max Planck Institute for Biophysical Chemistry

    Göttingen, Germany

    2 h-index

    6 publications

    1.6K citations

  2. Johns Hopkins University

    Baltimore, United States

    2 h-index

    2 publications

    529 citations

  3. Pacific Northwest National Laboratory

    Richland, United States

    2 h-index

    4 publications

    460 citations

  4. University of Geneva

    Geneva, Switzerland

    2 h-index

    5 publications

    485 citations

  5. University of Hong Kong

    Pok Fu Lam, Hong Kong

    2 h-index

    6 publications

    225 citations

  6. United States Department of Agriculture

    Washington, United States

    2 h-index

    2 publications

    54 citations

  7. Polyclinic Medical University

    Lausanne, Switzerland

    2 h-index

    2 publications

    230 citations

  8. Seoul National University

    Seoul, South Korea

    2 h-index

    2 publications

    529 citations

1–8 of 85

Venues

  1. BMC Genomics

    4 publications · 120 citations

    4

    h-index

  2. Journal of Computational Biology

    2 publications · 75 citations

    2

    h-index

  3. Nature Communications

    2 publications · 250 citations

    2

    h-index

  4. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 2 publications · 67 citations

    2

    h-index

  5. PLoS ONE

    2 publications · 428 citations

    2

    h-index

1–5