Concepedia

Mate-pair Assembly

Mate-Pair Assembly is a de novo genome assembly method that utilizes paired-end sequencing reads with large, known insert sizes to scaffold contigs and resolve repetitive regions by providing long-range connectivity information.

47

Publications

5.2K

Citations

431

Authors

209

Institutions

Publications per year

2017–2026

24

Parents

Publications

47

Scaffolding pre-assembled contigs using SSPACE

Marten Boetzer, Christiaan V. Henkel, Hans J. Jansen et al. · Bioinformatics · 2010 · 2.5K citations · Full text

, , +16

Hierarchical Scaffolding With Bambus

Mihai Pop, D. Kosack, Steven L. Salzberg · Genome Research · 2004 · 211 citations · Full text

, , +17

Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences

Song Gao, Wing‐Kin Sung, Niranjan Nagarajan · Journal of Computational Biology · 2011 · 198 citations · Full text

, , +16

Sequencing and de novo assembly of 150 genomes from Denmark as a population reference

Lasse Maretty, Jacob Malte Jensen, Bent Petersen et al. · Nature · 2017 · 174 citations · Full text

, , +17

Unlocking Short Read Sequencing for Metagenomics

Sébastien Rodrigue, Arne Materna, Sonia Timberlake et al. · PLoS ONE · 2010 · 169 citations · Full text

, , +14

1–5 of 47

Authors

431

  1. ZX
    Zhuyi Xue

    Canada's Michael Smith Genome Sciences Centre, Canada

    2 publications · 148 citations

    2

    h-index

  2. SR
    Swidbert R. Ott

    University of Cambridge, United Kingdom

    2 publications · 92 citations

    2

    h-index

  3. RL
    René L. Warren

    Canada's Michael Smith Genome Sciences Centre, Canada

    2 publications · 148 citations

    2

    h-index

  4. PA
    Pavel A. Pevzner

    University of California San Diego, United States

    2 publications · 99 citations

    2

    h-index

  5. FC
    Fernando Cruz

    Universitat Pompeu Fabra, Spain

    2 publications · 93 citations

    2

    h-index

1–5 of 431

Institutions

209

  1. University of Copenhagen

    Copenhagen, Denmark

    4 h-index

    19 publications

    2.8K citations

  2. University of Zurich

    Zurich, Switzerland

    3 h-index

    7 publications

    604 citations

  3. Centre National de la Recherche Scientifique

    Paris, France

    3 h-index

    3 publications

    117 citations

  4. Joint Genome Institute

    Berkeley, United States

    3 h-index

    18 publications

    924 citations

  5. University of Pretoria

    Pretoria, South Africa

    3 h-index

    11 publications

    289 citations

  6. St Petersburg University

    Saint Petersburg, Russia

    3 h-index

    8 publications

    223 citations

  7. BGI Group (China)

    Shenzhen, China

    3 h-index

    23 publications

    2.4K citations

  8. University of California, Berkeley

    Berkeley, United States

    2 h-index

    2 publications

    41 citations

1–8 of 209

Venues

  1. Bioinformatics

    6 publications · 2.8K citations

    6

    h-index

  2. BMC Genomics

    4 publications · 186 citations

    4

    h-index

  3. G3 Genes Genomes Genetics

    4 publications · 216 citations

    4

    h-index

  4. Journal of Computational Biology

    4 publications · 320 citations

    4

    h-index

  5. GigaScience

    4 publications · 133 citations

    4

    h-index

1–5