Concepedia

K-mer Based Validation

K-Mer Based Validation is a computational method in genome assembly assessment that evaluates the accuracy and completeness of an assembly by analyzing the presence, frequency, and distribution of short nucleotide subsequences of length *k* (k-mers) derived from raw sequencing reads.

6

Publications

3.9K

Citations

23

Authors

14

Institutions

Publications per year

2017–2026

5

Parents

Publications

6

Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies

Arang Rhie, Brian P. Walenz, Sergey Koren et al. · Genome biology · 2020 · 3.5K citations · Full text

, , +17

SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data

Lennard Epping, Andries J. van Tonder, Rebecca A. Gladstone et al. · Microbial Genomics · 2018 · 155 citations · Full text

, , +13

Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies

Arang Rhie, Brian P. Walenz, Sergey Koren et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2020 · 73 citations · Full text

, , +17

Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation

Giulio Formenti, Arang Rhie, Brian P. Walenz et al. · Nature Methods · 2022 · 69 citations · Full text

, , +14

A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria

Erki Aun, Age Brauer, Veljo Kisand et al. · PLoS Computational Biology · 2018 · 58 citations · Full text

, , +15

1–5 of 6

Authors

23

  1. BP
    Brian P. Walenz

    National Human Genome Research Institute, United States

    3 publications · 3.7K citations

    3

    h-index

  2. SK
    Sergey Koren

    National Human Genome Research Institute, United States

    3 publications · 3.7K citations

    3

    h-index

  3. AM
    Adam M. Phillippy

    National Human Genome Research Institute, United States

    3 publications · 3.7K citations

    3

    h-index

  4. AR
    Arang Rhie

    National Human Genome Research Institute, United States

    3 publications · 3.7K citations

    3

    h-index

  5. EW
    Eugene W. Myers

    Max Planck Institute of Molecular Cell Biology and Genetics, Germany

    1 publications · 69 citations

    1

    h-index

1–5 of 23

Institutions

14

  1. National Human Genome Research Institute

    Bethesda, United States

    3 h-index

    12 publications

    14.6K citations

  2. National Institutes of Health

    Bethesda, United States

    3 h-index

    13 publications

    14.7K citations

  3. Howard Hughes Medical Institute

    Chevy Chase, United States

    1 h-index

    2 publications

    138 citations

  4. Universidade Federal do Rio de Janeiro

    Rio de Janeiro, Brazil

    1 h-index

    3 publications

    147 citations

  5. Genomics (United Kingdom)

    Oxford, United Kingdom

    1 h-index

    3 publications

    465 citations

  6. Norwich Research Park

    Norwich, United Kingdom

    1 h-index

    1 publications

    155 citations

  7. National Center for Biotechnology Information

    Bethesda, United States

    1 h-index

    1 publications

    69 citations

  8. Max Planck Institute of Molecular Cell Biology and Genetics

    Dresden, Germany

    1 h-index

    1 publications

    69 citations

1–8 of 14

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 1 publications · 73 citations

    1

    h-index

  2. PLoS Computational Biology

    1 publications · 58 citations

    1

    h-index

  3. Microbial Genomics

    MGen · 1 publications · 155 citations

    1

    h-index

  4. Genome biology

    1 publications · 3.5K citations

    1

    h-index

  5. Genome Research

    GR · 1 publications · 49 citations

    1

    h-index

1–5