Concepedia

Isoform Reconstruction

Isoform Reconstruction is the computational process of inferring full-length mRNA transcript structures from sequencing data, distinguishing itself by specifically resolving alternatively spliced variants arising from the same gene locus.

71

Publications

7.1K

Citations

415

Authors

180

Institutions

Publications per year

2017–2026

33

Parents

Publications

71

<i>Oases:</i>robust<i>de novo</i>RNA-seq assembly across the dynamic range of expression levels

Marcel H. Schulz, Daniel R. Zerbino, Martin Vingron et al. · Bioinformatics · 2012 · 1.5K citations · Full text

, , +17

Assessment of transcript reconstruction methods for RNA-seq

Tamara Steijger, Josep F. Abril, Pär G. Engström et al. · Nature Methods · 2013 · 771 citations · Full text

, , +17

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

Rob Patro, Stephen M. Mount, Carl Kingsford · Nature Biotechnology · 2014 · 649 citations · Full text

, , +13

Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads

Ernest Turro, Shu-Yi Su, Ângela Gonçalves et al. · Genome biology · 2011 · 285 citations · Full text

, , +17

rMATS-turbo: an efficient and flexible computational tool for alternative splicing analysis of large-scale RNA-seq data

Yuanyuan Wang, Zhijie Xie, Eric Kutschera et al. · Nature Protocols · 2024 · 258 citations

, , +13

1–5 of 71

Authors

415

  1. KS
    Kristoffer Sahlin

    Science for Life Laboratory, Sweden

    5 publications · 386 citations

    5

    h-index

  2. PM
    Paul Medvedev

    Pennsylvania State University, United States

    5 publications · 386 citations

    5

    h-index

  3. WS
    Wei Sun

    Max Delbrück Center, Germany

    2 publications · 135 citations

    2

    h-index

  4. HT
    Hagen Tilgner

    Cornell University, United States

    2 publications · 325 citations

    2

    h-index

  5. AA
    Athma A. Pai

    University of Chicago, United States

    2 publications · 26 citations

    2

    h-index

1–5 of 415

Institutions

180

  1. Pennsylvania State University

    State College, United States

    6 h-index

    11 publications

    736 citations

  2. European Bioinformatics Institute

    Cambridge, United Kingdom

    4 h-index

    8 publications

    7.1K citations

  3. Carnegie Mellon University

    Pittsburgh, United States

    3 h-index

    5 publications

    2.8K citations

  4. The University of Melbourne

    Melbourne, Australia

    3 h-index

    12 publications

    300 citations

  5. University of Massachusetts Chan Medical School

    Worcester, United States

    3 h-index

    13 publications

    707 citations

  6. Wellcome Trust

    London, United Kingdom

    3 h-index

    5 publications

    4.8K citations

  7. University of California, Los Angeles

    Los Angeles, United States

    3 h-index

    5 publications

    558 citations

  8. Stanford University

    Stanford, United States

    3 h-index

    5 publications

    192 citations

1–8 of 180

Venues

  1. Bioinformatics

    8 publications · 1.9K citations

    8

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 7 publications · 237 citations

    7

    h-index

  3. Nature Communications

    6 publications · 495 citations

    6

    h-index

  4. Genome Research

    GR · 4 publications · 420 citations

    4

    h-index

  5. Scientific Reports

    4 publications · 124 citations

    4

    h-index

1–5