Concepedia

Integrated Omics Constraints

Integrated Omics Constraints is a computational modeling framework that incorporates multi-omics data into genome-scale metabolic models to refine flux predictions by imposing biological feasibility through layered regulatory, expression, and metabolic constraints.

5

Publications

318

Citations

24

Authors

12

Institutions

Publications per year

2017–2026

2

Parents

Publications

5

GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression data

Brian J. Schmidt, Ali Ebrahim, Thomas Metz et al. · Bioinformatics · 2013 · 136 citations · Full text

, , +17

Understanding butanol tolerance and assimilation in <scp> <i>P</i> </scp> <i>seudomonas putida</i>   <scp>BIRD</scp> ‐1: an integrated omics approach

María del Sol Cuenca, Amalia Roca, Carlos Molina‐Santiago et al. · Microbial Biotechnology · 2016 · 59 citations · Full text

, , +13

Seeing the wood for the trees: a forest of methods for optimization and omic-network integration in metabolic modelling

Supreeta Vijayakumar, Max Conway, Píetro Lió et al. · Briefings in Bioinformatics · 2017 · 49 citations · Full text

, , +17

Principles of proteome allocation are revealed using proteomic data and genome-scale models

Laurence Yang, James T. Yurkovich, Colton J. Lloyd et al. · Scientific Reports · 2016 · 44 citations · Full text

, , +17

Integration of enzyme constraints in a genome-scale metabolic model of Aspergillus niger improves phenotype predictions

Jingru Zhou, Yingping Zhuang, Jianye Xia · Microbial Cell Factories · 2021 · 30 citations · Full text

, , +17

1–5 of 5

Authors

24

  1. BØ
    Bernhard Ø. Palsson

    University of California San Diego, United States

    2 publications · 180 citations

    2

    h-index

  2. AE
    Ali Ebrahim

    University of California San Diego, United States

    2 publications · 180 citations

    2

    h-index

  3. ED
    Estrella Duque

    Estación Experimental del Zaidín, Spain

    1 publications · 59 citations

    1

    h-index

  4. JA
    Jean Armengaud

    Commissariat à l'Énergie Atomique et aux Énergies Alternatives, France

    1 publications · 59 citations

    1

    h-index

  5. MC
    Max Conway

    University of Cambridge, United Kingdom

    1 publications · 49 citations

    1

    h-index

1–5 of 24

Institutions

12

  1. University of California San Diego

    San Diego, United States

    2 h-index

    11 publications

    1K citations

  2. Abengoa (Spain)

    Seville, Spain

    1 h-index

    5 publications

    295 citations

  3. Teesside University

    Middlesbrough, United Kingdom

    1 h-index

    2 publications

    98 citations

  4. Pacific Northwest National Laboratory

    Richland, United States

    1 h-index

    6 publications

    816 citations

  5. Novo Nordisk Foundation

    Copenhagen, Denmark

    1 h-index

    1 publications

    44 citations

  6. University of Cambridge

    Cambridge, United Kingdom

    1 h-index

    2 publications

    98 citations

  7. Commissariat à l'Énergie Atomique et aux Énergies Alternatives

    Paris, France

    1 h-index

    1 publications

    59 citations

  8. Tianjin Institute of Industrial Biotechnology

    Tianjin, China

    1 h-index

    1 publications

    30 citations

1–8 of 12

Venues

  1. Microbial Biotechnology

    1 publications · 59 citations

    1

    h-index

  2. Bioinformatics

    1 publications · 136 citations

    1

    h-index

  3. Microbial Cell Factories

    1 publications · 30 citations

    1

    h-index

  4. Briefings in Bioinformatics

    1 publications · 49 citations

    1

    h-index

  5. Scientific Reports

    1 publications · 44 citations

    1

    h-index

1–5