Ali Ebrahim

COBRApy: COnstraints-Based Reconstruction and Analysis for Python

Ali Ebrahim, Joshua A. Lerman, Bernhard Ø. Palsson et al. · BMC Systems Biology · 2013 · 1.5K citations · Full text

Life Sciences, Bioinformatics, Systems Biology +13

BiGG Models: A platform for integrating, standardizing and sharing genome-scale models

Zachary A. King, Justin S. Lu, Andreas Dräger et al. · Nucleic Acids Research · 2015 · 1K citations · Full text

Life Sciences, Biochemistry, Bioinformatics +17

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways

Zachary A. King, Andreas Dräger, Ali Ebrahim et al. · PLoS Computational Biology · 2015 · 435 citations · Full text

Computing, Bioinformatics, Visualization +9

Use of Adaptive Laboratory Evolution To Discover Key Mutations Enabling Rapid Growth of Escherichia coli K-12 MG1655 on Glucose Minimal Medium

Ryan A. LaCroix, Troy E. Sandberg, Edward J. O’Brien et al. · Applied and Environmental Microbiology · 2014 · 274 citations · Full text

Life Sciences, Biology, Genetics +16

COBRAme: A computational framework for genome-scale models of metabolism and gene expression

Colton J. Lloyd, Ali Ebrahim, Laurence Yang et al. · PLoS Computational Biology · 2018 · 179 citations · Full text

Life Sciences, Bioinformatics, Biology +13