Joshua A. Lerman

COBRApy: COnstraints-Based Reconstruction and Analysis for Python

Ali Ebrahim, Joshua A. Lerman, Bernhard Ø. Palsson et al. · BMC Systems Biology · 2013 · 1.5K citations · Full text

Life Sciences, Bioinformatics, Systems Biology +13

A comprehensive genome‐scale reconstruction of Escherichia coli metabolism—2011

Jeffrey D. Orth, Tom M Conrad, Jessica Na et al. · Molecular Systems Biology · 2011 · 1.1K citations · Full text

Life Sciences, Bioinformatics, Microbiology +12

BiGG Models: A platform for integrating, standardizing and sharing genome-scale models

Zachary A. King, Justin S. Lu, Andreas Dräger et al. · Nucleic Acids Research · 2015 · 1K citations · Full text

Life Sciences, Biochemistry, Bioinformatics +17

Omic data from evolved E. coli are consistent with computed optimal growth from genome‐scale models

Nathan E. Lewis, Kim Hixson, Tom M Conrad et al. · Molecular Systems Biology · 2010 · 825 citations · Full text

Life Sciences, Evolutionary Biology, Microbiology +17

Genome‐scale models of metabolism and gene expression extend and refine growth phenotype prediction

Edward J. O’Brien, Joshua A. Lerman, Roger L. Chang et al. · Molecular Systems Biology · 2013 · 524 citations · Full text

Life Sciences, Genetics, Molecular Biology +14