Genome‐scale models of metabolism and gene expression extend and refine growth phenotype prediction

Edward J. O’Brien, Joshua A. Lerman, Roger L. Chang, +2

Molecular Systems Biology

Metabolic network reconstruction of <i>Chlamydomonas</i> offers insight into light‐driven algal metabolism

Roger L. Chang, Lila Ghamsari, Ani Manichaikul, +8

Molecular Systems Biology

BiologyMetabolic NetworkBiosynthesisBiochemistryPhotosystems +8

Network Context and Selection in the Evolution to Enzyme Specificity

Hojung Nam, Nathan E. Lewis, Joshua A. Lerman, +4

Science

Escherichia Coli MetabolismEngineeringGeneticsGeneralist EnzymesMetabolic Networks +20

Drug Off-Target Effects Predicted Using Structural Analysis in the Context of a Metabolic Network Model

Roger L. Chang, Li Xie, Lei Xie, +2

PLoS Computational Biology

Drug TargetEngineeringStructural BioinformaticsNephrologyUsing Structural Analysis +18

Modular organization of protein interaction networks

Feng Luo, Yunfeng Yang, Chin‐Fu Chen, +3

Bioinformatics

Structural Systems Biology Evaluation of Metabolic Thermotolerance in <i>Escherichia coli</i>

Roger L. Chang, Kathleen A. Andrews, Donghyuk Kim, +3

Science

Metabolic network analysis integrated with transcript verification for sequenced genomes

Ani Manichaikul, Lila Ghamsari, Erik Hom, +14

Nature Methods

BioinformaticsMetabolic NetworkEngineeringGeneticsComputational Biology +12

BioHealthBase: informatics support in the elucidation of influenza virus host–pathogen interactions and virulence

R. Burke Squires, Catherine A. Macken, Adolfo Garcı́a-Sastre, +8

Nucleic Acids Research

Systems biology of the structural proteome

Elizabeth Brunk, Nathan Mih, Jonathan M. Monk, +7

BMC Systems Biology

Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow

Elizabeth Brunk, Roger L. Chang, Jing Xia, +10

Proceedings of the National Academy of Sciences