James T. Yurkovich

Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0

Laurent Heirendt, Sylvain Arreckx, Thomas Pfau et al. · Nature Protocols · 2019 · 1.3K citations · Full text

Metabolic Network, Engineering, Biochemistry +12

Gut microbiome pattern reflects healthy ageing and predicts survival in humans

Tomasz Wilmanski, Christian Diener, Noa Rappaport et al. · Nature Metabolism · 2021 · 628 citations · Full text

Probiotic, Dysbiosis, Longevity +11

BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree

Charles J. Norsigian, Neha Pusarla, John Luke McConn et al. · Nucleic Acids Research · 2019 · 273 citations · Full text

Metabolic Network Analysis Reveals Altered Bile Acid Synthesis and Metabolism in Alzheimer’s Disease

Priyanka Baloni, Cory C. Funk, Jingwen Yan et al. · Cell Reports Medicine · 2020 · 189 citations · Full text

Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance

Erol Kavvas, Edward Catoiu, Nathan Mih et al. · Nature Communications · 2018 · 182 citations · Full text