Concepedia

Constrained Sequence Alignment

Constrained Sequence Alignment is a dynamic programming method for sequence alignment that restricts the alignment path to predefined regions or conditions, thereby distinguishing it from unconstrained alignment methods by incorporating prior biological or structural knowledge into the alignment process.

25

Publications

1.1K

Citations

140

Authors

37

Institutions

Publications per year

2017–2026

0

Parents

Publications

25

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

Elliott H. Margulies, Gregory M. Cooper, George Asimenos et al. · Genome Research · 2007 · 220 citations · Full text

, , +15

Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints

Robin D. Dowell, Sean R. Eddy · BMC Bioinformatics · 2006 · 128 citations · Full text

, , +16

Parametric optimization of sequence alignment

Dan Gusfield, Krishnakumar Balasubramanian, Dalit Naor · Algorithmica · 1994 · 110 citations

, , +4

A simple algorithm for the constrained sequence problems

Francis Y. L. Chin, Alfredo De Santis, Anna Lisa Ferrara et al. · Information Processing Letters · 2004 · 97 citations · Full text

, , +11

Automated constraint-based nucleotide sequence selection for DNA computation

Alexander J. Hartemink, David K. Gifford, Julia Khodor · Biosystems · 1999 · 94 citations

, , +13

1–5 of 25

Authors

140

  1. CL
    Chin Lung Lu

    National Tsing Hua University, Taiwan

    6 publications · 145 citations

    6

    h-index

  2. CY
    Chuan Yi Tang

    National Tsing Hua University, Taiwan

    5 publications · 110 citations

    5

    h-index

  3. AN
    Abdullah N. Arslan

    University of Vermont, United States

    3 publications · 52 citations

    3

    h-index

  4. YT
    Yin-Te Tsai

    Providence University, Taiwan

    3 publications · 77 citations

    3

    h-index

  5. JC
    Jia‐Ming Chang

    Centre for Genomic Regulation, Spain

    3 publications · 77 citations

    3

    h-index

1–5 of 140

Institutions

37

  1. National Yang Ming Chiao Tung University

    Hsinchu, Taiwan

    7 h-index

    12 publications

    275 citations

  2. National Tsing Hua University

    Hsinchu, Taiwan

    5 h-index

    30 publications

    712 citations

  3. Providence University

    Taichung, Taiwan

    4 h-index

    5 publications

    139 citations

  4. Pennsylvania State University

    State College, United States

    3 h-index

    8 publications

    998 citations

  5. University of Hong Kong

    Pok Fu Lam, Hong Kong

    3 h-index

    10 publications

    437 citations

  6. University of Vermont

    Burlington, United States

    3 h-index

    5 publications

    76 citations

  7. University of Arizona

    Tucson, United States

    2 h-index

    4 publications

    118 citations

  8. National Yang Ming University Hospital

    Yilan, Taiwan

    2 h-index

    2 publications

    24 citations

1–8 of 37

Venues

  1. PubMed

    Repository · 3 publications · 36 citations

    3

    h-index

  2. 2

    h-index

  3. Information Processing Letters

    2 publications · 111 citations

    2

    h-index

  4. Bioinformatics

    2 publications · 54 citations

    2

    h-index

  5. 1

    h-index

1–5