Concepedia

Computational Pipeline Optimization

Computational Pipeline Optimization is a methodological framework within label-free quantification that systematically enhances the efficiency, accuracy, and reproducibility of computational workflows by refining algorithmic parameters, data processing steps, and resource allocation strategies specific to mass spectrometry-based proteomic analyses.

34

Publications

1.8K

Citations

222

Authors

112

Institutions

Publications per year

2017–2026

24

Parents

Publications

34

EASI-FISH for thick tissue defines lateral hypothalamus spatio-molecular organization

Yuhan Wang, Mark Eddison, Greg Fleishman et al. · Cell · 2021 · 210 citations · Full text

, , +13

Analytical workflow of double-digest restriction site-associated DNA sequencing based on empirical and<i>in silico</i>optimization in tomato

Kenta Shirasawa, Hideki Hirakawa, Sachiko Isobe · DNA Research · 2016 · 149 citations · Full text

, , +17

MG-RAST version 4—lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis

Folker Meyer, Saurabh Bagchi, Somali Chaterji et al. · Briefings in Bioinformatics · 2017 · 146 citations · Full text

, , +13

Mergeomics: multidimensional data integration to identify pathogenic perturbations to biological systems

Le Shu, Yuqi Zhao, Zeyneb Kurt et al. · BMC Genomics · 2016 · 134 citations · Full text

, , +17

A computational pipeline for comparative ChIP-seq analyses

Anaïs F. Bardet, Qiye He, Julia Zeitlinger et al. · Nature Protocols · 2011 · 123 citations

, , +5

1–5 of 34

Authors

222

  1. CC
    Charlie C. L. Wang

    Chinese University of Hong Kong, Hong Kong SAR China

    2 publications · 62 citations

    2

    h-index

  2. HR
    Harikrishna Rallapalli

    New York University, United States

    1 publications · 18 citations

    1

    h-index

  3. MP
    Mihika Pradhan

    DKFZ-ZMBH Alliance, Germany

    1 publications · 115 citations

    1

    h-index

  4. TZ
    Tianyu Zhang

    University of Manchester, United Kingdom

    1 publications · 32 citations

    1

    h-index

  5. NH
    Nina Huber

    Stanford University, United States

    1 publications · 40 citations

    1

    h-index

1–5 of 222

Institutions

112

  1. Chinese Academy of Sciences

    Beijing, China

    2 h-index

    7 publications

    113 citations

  2. University of Manchester

    Manchester, United Kingdom

    2 h-index

    6 publications

    190 citations

  3. Heidelberg University

    Heidelberg, Germany

    2 h-index

    6 publications

    338 citations

  4. University of California San Diego

    San Diego, United States

    2 h-index

    2 publications

    246 citations

  5. University of Chicago

    Chicago, United States

    2 h-index

    6 publications

    766 citations

  6. University of California, Los Angeles

    Los Angeles, United States

    2 h-index

    10 publications

    983 citations

  7. Health Data Research UK

    London, United Kingdom

    1 h-index

    1 publications

    62 citations

  8. The University of Texas MD Anderson Cancer Center

    Houston, United States

    1 h-index

    2 publications

    22 citations

1–8 of 112

Venues

  1. Nucleic Acids Research

    2 publications · 152 citations

    2

    h-index

  2. BMC Genomics

    2 publications · 145 citations

    2

    h-index

  3. ACM Transactions on Graphics

    TOG · 2 publications · 62 citations

    2

    h-index

  4. Bioinformatics

    2 publications · 82 citations

    2

    h-index

  5. BMC Bioinformatics

    1 publications · 65 citations

    2

    h-index

1–5