Concepedia

Computational Biophysics

Computational Biophysics is a subfield of biophysics that applies high-performance computing and computational modeling to investigate the molecular dynamics and physical properties of biological macromolecules and systems.

8.6K

Publications

775.6K

Citations

16.9K

Authors

3.4K

Institutions

Publications per year

2017–2026

2K

Parents

Children

Publications

8.6K

Scalable molecular dynamics with NAMD

J. C. Phillips, Rosemary Braun, Wei Wang et al. · Journal of Computational Chemistry · 2005 · 17.4K citations · Full text

, , +17

<scp>CHARMM</scp>: A program for macromolecular energy, minimization, and dynamics calculations

Bernard R. Brooks, Robert E. Bruccoleri, Barry D. Olafson et al. · Journal of Computational Chemistry · 1983 · 14.9K citations

, , +13

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination

Ali Punjani, John L. Rubinstein, David J. Fleet et al. · Nature Methods · 2017 · 10.7K citations

, , +12

CHARMM‐GUI: A web‐based graphical user interface for CHARMM

Sunhwan Jo, Taehoon Kim, Vidyashankara Iyer et al. · Journal of Computational Chemistry · 2008 · 9.7K citations

, , +17

The Amber biomolecular simulation programs

David A. Case, Thomas E. Cheatham, Tom Darden et al. · Journal of Computational Chemistry · 2005 · 9.6K citations · Full text

, , +17

1–5 of 8.6K

Authors

16.9K

  1. JA
    J. Andrew McCammon

    University of California San Diego, United States

    98 publications · 26.3K citations

    53

    h-index

  2. VS
    Vijay S. Pande

    Stanford University, United States

    70 publications · 20.3K citations

    48

    h-index

  3. MK
    Martin Karplus

    Harvard University, United States

    45 publications · 22K citations

    36

    h-index

  4. ‪J
    ‪Siewert J. Marrink

    University of Groningen, Netherlands

    46 publications · 13.5K citations

    35

    h-index

  5. HA
    Harold A. Scheraga

    Cornell University, United States

    51 publications · 4.9K citations

    34

    h-index

1–5 of 16.9K

Institutions

3.4K

  1. Centre National de la Recherche Scientifique

    Paris, France

    72 h-index

    818 publications

    67.4K citations

  2. University of Illinois Urbana-Champaign

    Urbana, United States

    69 h-index

    452 publications

    260.7K citations

  3. Columbia University

    New York, United States

    66 h-index

    224 publications

    60.1K citations

  4. Stanford University

    Stanford, United States

    65 h-index

    460 publications

    97.8K citations

  5. University of California San Diego

    San Diego, United States

    61 h-index

    355 publications

    60.1K citations

  6. University of Groningen

    Groningen, The Netherlands

    56 h-index

    299 publications

    90.1K citations

  7. Cornell University

    Ithaca, United States

    55 h-index

    304 publications

    25.5K citations

  8. University of Oxford

    Oxford, United Kingdom

    54 h-index

    364 publications

    32.1K citations

1–8 of 3.4K

Venues

  1. The Journal of Chemical Physics

    883 publications · 71.6K citations

    124

    h-index

  2. Journal of Chemical Theory and Computation

    JCTC · 759 publications · 92K citations

    115

    h-index

  3. Biophysical Journal

    403 publications · 39.6K citations

    98

    h-index

  4. Journal of Computational Chemistry

    380 publications · 101.5K citations

    94

    h-index

  5. The Journal of Physical Chemistry B

    493 publications · 33K citations

    90

    h-index

1–5

See also

Computational Biophysics

Core Methods

Applications

Modeling Scales

Validation Metrics