Concepedia

Coarse-grained Folding Models

Coarse-Grained Folding Models is a computational modeling framework in structural biology that simplifies the representation of biomolecules by grouping multiple atoms or residues into fewer interaction sites, thereby reducing system complexity while retaining essential features of the energy landscape for efficient simulation of protein folding pathways.

202

Publications

12.4K

Citations

537

Authors

246

Institutions

Publications per year

2017–2026

27

Parents

Publications

202

On the Hamiltonian replica exchange method for efficient sampling of biomolecular systems: Application to protein structure prediction

Hiroaki Fukunishi, Osamu Watanabe, Shoji Takada · The Journal of Chemical Physics · 2002 · 827 citations

, , +14

Native contacts determine protein folding mechanisms in atomistic simulations

Robert B. Best, Gerhard Hummer, William A. Eaton · Proceedings of the National Academy of Sciences · 2013 · 632 citations · Full text

, , +15

The power of coarse graining in biomolecular simulations

Helgi I. Ingólfsson, César A. López, Jaakko J. Uusitalo et al. · Wiley Interdisciplinary Reviews Computational Molecular Science · 2013 · 588 citations · Full text

, , +17

Moltemplate: A Tool for Coarse-Grained Modeling of Complex Biological Matter and Soft Condensed Matter Physics

Andrew I. Jewett, David Stelter, Jason Lambert et al. · Journal of Molecular Biology · 2021 · 510 citations · Full text

, , +16

Low-dimensional, free-energy landscapes of protein-folding reactions by nonlinear dimensionality reduction

Payel Das, Mark Moll, Hernán Stamati et al. · Proceedings of the National Academy of Sciences · 2006 · 343 citations · Full text

, , +17

1–5 of 202

Authors

537

  1. PG
    Peter G. Wolynes

    Center for Theoretical Biological Physics, United States

    8 publications · 493 citations

    8

    h-index

  2. RB
    Robert B. Best

    National Institutes of Health, United States

    7 publications · 905 citations

    7

    h-index

  3. AK
    Andrzej Koliński

    University of Warsaw, Poland

    7 publications · 137 citations

    7

    h-index

  4. GA
    Gregory A. Voth

    University of Chicago, United States

    6 publications · 569 citations

    6

    h-index

  5. CC
    Cecilia Clementi

    Rice University, United States

    5 publications · 713 citations

    5

    h-index

1–5 of 537

Institutions

246

  1. Center for Theoretical Biological Physics

    Houston, United States

    12 h-index

    41 publications

    3.8K citations

  2. Rice University

    Houston, United States

    11 h-index

    34 publications

    4.2K citations

  3. University of Warsaw

    Warsaw, Poland

    11 h-index

    28 publications

    751 citations

  4. Centre National de la Recherche Scientifique

    Paris, France

    10 h-index

    26 publications

    1.1K citations

  5. Scuola Internazionale Superiore di Studi Avanzati

    Trieste, Italy

    10 h-index

    18 publications

    656 citations

  6. National Institutes of Health

    Bethesda, United States

    8 h-index

    15 publications

    3.3K citations

  7. National Institute of Diabetes and Digestive and Kidney Diseases

    Bethesda, United States

    8 h-index

    14 publications

    3.1K citations

  8. Cornell University

    Ithaca, United States

    7 h-index

    24 publications

    1.4K citations

1–8 of 246

Venues

  1. Proceedings of the National Academy of Sciences

    PNAS · 21 publications · 2.3K citations

    19

    h-index

  2. The Journal of Chemical Physics

    16 publications · 1.7K citations

    14

    h-index

  3. The Journal of Physical Chemistry B

    17 publications · 649 citations

    14

    h-index

  4. Journal of Chemical Theory and Computation

    JCTC · 13 publications · 388 citations

    13

    h-index

  5. Proteins Structure Function and Bioinformatics

    18 publications · 648 citations

    13

    h-index

1–5