Shoji Takada

On the Hamiltonian replica exchange method for efficient sampling of biomolecular systems: Application to protein structure prediction

Hiroaki Fukunishi, Osamu Watanabe, Shoji Takada · The Journal of Chemical Physics · 2002 · 827 citations

Natural Sciences, Biophysics, Computational Biophysics +14

Roles of native topology and chain-length scaling in protein folding: A simulation study with a Gō-like model

Nobuyasu Koga, Shoji Takada · Journal of Molecular Biology · 2001 · 353 citations

Life Sciences, Biochemistry, Biophysics +17

Bimodal protein solubility distribution revealed by an aggregation analysis of the entire ensemble of <i>Escherichia coli</i> proteins

Tatsuya Niwa, Bei‐Wen Ying, Katsuyo Saito et al. · Proceedings of the National Academy of Sciences · 2009 · 340 citations · Full text

Life Sciences, Biochemistry, Molecular Biology +15

Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations

Kei-ichi Okazaki, Nobuyasu Koga, Shoji Takada et al. · Proceedings of the National Academy of Sciences · 2006 · 332 citations · Full text

Life Sciences, Biochemistry, Biophysics +17

Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms

Kei-ichi Okazaki, Shoji Takada · Proceedings of the National Academy of Sciences · 2008 · 327 citations · Full text

Natural Sciences, Biophysics, Biomolecular Modeling +16