Shoji Takada

On the Hamiltonian replica exchange method for efficient sampling of biomolecular systems: Application to protein structure prediction

Hiroaki Fukunishi, Osamu Watanabe, Shoji Takada · The Journal of Chemical Physics · 2002 · 814 citations

Protein Assembly, Biomolecular Structure Prediction, Structural Bioinformatics +20

Roles of native topology and chain-length scaling in protein folding: A simulation study with a Gō-like model

Nobuyasu Koga, Shoji Takada · Journal of Molecular Biology · 2001 · 350 citations

Protein Assembly, Protein Folding, Chain-length Scaling +11

Bimodal protein solubility distribution revealed by an aggregation analysis of the entire ensemble of <i>Escherichia coli</i> proteins

Tatsuya Niwa, Bei‐Wen Ying, Katsuyo Saito et al. · Proceedings of the National Academy of Sciences · 2009 · 329 citations · Full text

Entire Ensemble, Protein Assembly, Molecular Biology +19

Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations

Kei-ichi Okazaki, Nobuyasu Koga, Shoji Takada et al. · Proceedings of the National Academy of Sciences · 2006 · 326 citations · Full text

Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms

Kei-ichi Okazaki, Shoji Takada · Proceedings of the National Academy of Sciences · 2008 · 324 citations · Full text

Protein Assembly, Molecular Biology, Protein Conformational Change +16