Concepedia

Alignment-based Phylogenetic Inference

Alignment-Based Phylogenetic Inference is a phylogenetic inference method that reconstructs evolutionary relationships among biological sequences by analyzing their aligned homologous positions, distinguished from other approaches by its foundational reliance on a multiple sequence alignment to identify positional correspondences prior to tree estimation.

277

Publications

37.3K

Citations

944

Authors

457

Institutions

Publications per year

2017–2026

35

Parents

Publications

277

Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments

Gerard Talavera, José Castresana · Systematic Biology · 2007 · 5.8K citations

, , +16

HyPhy: hypothesis testing using phylogenies

Sergei L. Kosakovsky Pond, Simon D. W. Frost, Spencer V. Muse · Bioinformatics · 2004 · 3K citations · Full text

, , +16

SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny

Nicolas Galtier, Manolo Gouy, Christian Gautier · Computer applications in the biosciences · 1996 · 2.2K citations

, , +17

Building Phylogenetic Trees from Molecular Data with MEGA

B G Hall · Molecular Biology and Evolution · 2013 · 1.6K citations

, , +17

Investigating Deep Phylogenetic Relationships among Cyanobacteria and Plastids by Small Subunit rRNA Sequence Analysis1

Seán Turner, Kathleen M. Pryer, Vivian Miao et al. · Journal of Eukaryotic Microbiology · 1999 · 1.6K citations

, , +17

1–5 of 277

Authors

944

  1. MP
    Mark P. Simmons

    Colorado State University, United States

    5 publications · 466 citations

    5

    h-index

  2. NG
    Nick Goldman

    European Bioinformatics Institute, United Kingdom

    5 publications · 512 citations

    5

    h-index

  3. AS
    Alexandros Stamatakis

    Heidelberg Institute for Theoretical Studies, Germany

    4 publications · 696 citations

    4

    h-index

  4. MH
    Michael Höhl

    University of Zurich, Switzerland

    3 publications · 175 citations

    3

    h-index

  5. MY
    Matthew Yoder

    Texas A&M University, United States

    3 publications · 239 citations

    3

    h-index

1–5 of 944

Institutions

457

  1. Centre National de la Recherche Scientifique

    Paris, France

    10 h-index

    22 publications

    9.4K citations

  2. Fudan University

    Shanghai, China

    6 h-index

    10 publications

    1.4K citations

  3. University of Arizona

    Tucson, United States

    6 h-index

    13 publications

    1.8K citations

  4. Chinese Academy of Sciences

    Beijing, China

    6 h-index

    11 publications

    666 citations

  5. University of California, Riverside

    Riverside, United States

    6 h-index

    13 publications

    1.8K citations

  6. Stockholm University

    Stockholm, Sweden

    5 h-index

    7 publications

    365 citations

  7. Natural History Museum

    London, United Kingdom

    5 h-index

    14 publications

    1.4K citations

  8. Swedish Museum of Natural History

    Stockholm, Sweden

    4 h-index

    6 publications

    528 citations

1–8 of 457

Venues

  1. Molecular Phylogenetics and Evolution

    33 publications · 2.1K citations

    24

    h-index

  2. Systematic Biology

    15 publications · 7.7K citations

    15

    h-index

  3. Molecular Biology and Evolution

    MBE · 14 publications · 3K citations

    14

    h-index

  4. Bioinformatics

    12 publications · 4.7K citations

    12

    h-index

  5. Cladistics

    9 publications · 589 citations

    9

    h-index

1–5