Simon D. W. Frost

HyPhy: hypothesis testing using phylogenies

Sergei L. Kosakovsky Pond, Simon D. W. Frost, Spencer V. Muse · Bioinformatics · 2004 · 3K citations · Full text

Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection

Sergei L. Kosakovsky Pond, Simon D. W. Frost · Molecular Biology and Evolution · 2005 · 2.4K citations

Comparative Genomics, Genetics, Counting Methods +25

Datamonkey: rapid detection of selective pressure on individual sites of codon alignments

Sergei L. Kosakovsky Pond, Simon D. W. Frost · Computer applications in the biosciences · 2005 · 1.4K citations · Full text

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

Wayne Delport, Art F. Y. Poon, Simon D. W. Frost et al. · Bioinformatics · 2010 · 1.2K citations · Full text

Comparative Genomics, Genetics, Hiv-1 Subtype Assignment +19

Producing polished prokaryotic pangenomes with the Panaroo pipeline

Gerry Tonkin‐Hill, Neil MacAlasdair, Christopher Ruis et al. · Genome biology · 2020 · 1.2K citations · Full text