Bioinformatics · 2004 · 3K citations · 22 references
Life SciencesBioinformaticsEvolutionary BiologyMolecular EvolutionPhylogeneticsSequence AnalysisMaximum Likelihood PhylogeneticsMolecular PhylogenyPhylogenetic AnalysisPhylogenetic InferencePhylogenetic Sequence AnalysisPhylogenetic Tree ReconstructionAlignment-based Phylogenetic InferenceDna Sequence Data AnalysisLikelihood-based InferenceModel-based Phylogenetic InferenceModel-based PhylogeneticsNucleotide Evolution ModelsPhylogenetic Hypothesis Testing
UNLABELLED: The HyPhypackage is designed to provide a flexible and unified platform for carrying out likelihood-based analyses on multiple alignments of molecular sequence data, with the emphasis on studies of rates and patterns of sequence evolution. AVAILABILITY: http://www.hyphy.org CONTACT: muse@stat.ncsu.edu SUPPLEMENTARY INFORMATION: HyPhydocumentation and tutorials are available at http://www.hyphy.org.
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MODELTEST: testing the model of DNA substitution.
David Posada, Keith A. Crandall · Bioinformatics · 1998 · 20.1K citations