VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

Jie Ren, Nathan A. Ahlgren, Yang Young Lu, +2

Microbiome

Identifying viruses from metagenomic data using deep learning

Jie Ren, Kai Song, Chao Deng, +6

Quantitative Biology

Alignment-free $d_2^*$ oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences

Nathan A. Ahlgren, Jie Ren, Yang Young Lu, +2

Nucleic Acids Research

Resurrection of endogenous retroviruses during aging reinforces senescence

Xiaoqian Liu, Zunpeng Liu, Zeming Wu, +30

Cell

Aging Atlas: a multi-omics database for aging biology

Guang‐Hui Liu, Yīmíng Bào, Jing Qu, +44

Nucleic Acids Research

EngineeringAgingGeneticsMultiomicsGenomics +19

Phloretin ameliorates dextran sulfate sodium-induced ulcerative colitis in mice by regulating the gut microbiota

Minna Wu, Puze Li, Yunying An, +7

Pharmacological Research

InflammationDysbiosisMucosal ImmunologyImmunologyGastroenterology +8

METTL3 counteracts premature aging via m6A-dependent stabilization of MIS12 mRNA

Zeming Wu, Yue Shi, Mingming Lu, +10

Nucleic Acids Research

Heterochronic parabiosis induces stem cell revitalization and systemic rejuvenation across aged tissues

Shuai Ma, Si Wang, Yanxia Ye, +24

Cell stem cell

Developmental BiologyAnti-agingAgingHeterochronic Parabiosis InducesLongevity +8

RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II

Mikel Zaratiegui, Stephane E. Castel, Danielle V. Irvine, +11

Nature

Transcriptional RegulationRna Pol IiNatural SciencesRna Binding ProteinsRna Splicing +8

A single-cell transcriptomic landscape of primate arterial aging

Weiqi Zhang, Shu Zhang, Pengze Yan, +17

Nature Communications