Brian Cleary

Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming

Geoffrey Schiebinger, Jian Shu, Marcin Tabaka et al. · Cell · 2019 · 796 citations · Full text

Cell Lineage, Developmental Biology, Optimal-transport Analysis +13

Systematic mapping of functional enhancer–promoter connections with CRISPR interference

Charles P. Fulco, Mathias Munschauer, Rockwell Anyoha et al. · Science · 2016 · 694 citations

Bioinformatics, Transcriptional Regulation, Transcription Factors +15

Multimodal pooled Perturb-CITE-seq screens in patient models define mechanisms of cancer immune evasion

Chris J. Frangieh, Johannes C. Melms, Pratiksha I. Thakore et al. · Nature Genetics · 2021 · 245 citations · Full text

Tumor Biology, Immune Evasion, Cancer Immune Evasion +11

High resolution time series reveals cohesive but short-lived communities in coastal plankton

Antonio M. Martín‐Platero, Brian Cleary, Kathryn M. Kauffman et al. · Nature Communications · 2018 · 180 citations · Full text

Engineering, Oceanography, Earth Science +16

Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning

Brian Cleary, Ilana Brito, Katherine Huang et al. · Nature Biotechnology · 2015 · 162 citations · Full text

Microbial Diversity, Metagenomic Datasets, Low-abundance Bacterial Strains +11