Julien Van Braekel

Targeting the 16S rRNA Gene for Bacterial Identification in Complex Mixed Samples: Comparative Evaluation of Second (Illumina) and Third (Oxford Nanopore Technologies) Generation Sequencing Technologies

Raf Winand, Bert Bogaerts, Stefan Hoffman et al. · International Journal of Molecular Sciences · 2019 · 219 citations · Full text

Life Sciences, Microbiology, Genomics +13

Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: Neisseria meningitidis as a Proof-of-Concept

Bert Bogaerts, Raf Winand, Qiang Fu et al. · Frontiers in Microbiology · 2019 · 56 citations · Full text

Life Sciences, Bioinformatics, Microbiology +15

Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

Bert Bogaerts, Stéphanie Nouws, Bavo Verhaegen et al. · Microbial Genomics · 2021 · 41 citations · Full text

Life Sciences, Bioinformatics, Microbiology +17

A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and <i>In Silico</i> Approaches

Bert Bogaerts, Thomas Delcourt, Karine Soetaert et al. · Journal of Clinical Microbiology · 2021 · 30 citations · Full text

Life Sciences, Bioinformatics, Microbiology +15

Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

Bert Bogaerts, Raf Winand, Julien Van Braekel et al. · Microbial Genomics · 2021 · 25 citations · Full text

Life Sciences, Bioinformatics, Microbiology +17