Bavo Verhaegen

Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens

Bert Bogaerts, An Van den Bossche, Bavo Verhaegen et al. · Journal of Clinical Microbiology · 2024 · 68 citations · Full text

Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates

Stéphanie Nouws, Bert Bogaerts, Bavo Verhaegen et al. · Scientific Reports · 2020 · 46 citations · Full text

Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

Bert Bogaerts, Stéphanie Nouws, Bavo Verhaegen et al. · Microbial Genomics · 2021 · 39 citations · Full text

Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies

Florence E. Buytaers, Assia Saltykova, Sarah Denayer et al. · Frontiers in Microbiology · 2021 · 38 citations · Full text

Methods to assess the effect of meat processing on viability of Toxoplasma gondii: towards replacement of mouse bioassay by in vitro testing

Marieke Opsteegh, Cecile Dam‐Deisz, Paulo de Boer et al. · International Journal for Parasitology · 2020 · 29 citations · Full text

Pathogen Detection, Pathology, Meat Processing +17