Bavo Verhaegen

Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens

Bert Bogaerts, An Van den Bossche, Bavo Verhaegen et al. · Journal of Clinical Microbiology · 2024 · 78 citations · Full text

Life Sciences, Genetics, Microbiology +16

Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates

Stéphanie Nouws, Bert Bogaerts, Bavo Verhaegen et al. · Scientific Reports · 2020 · 48 citations · Full text

Life Sciences, Food Science, Microbiology +17

Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

Bert Bogaerts, Stéphanie Nouws, Bavo Verhaegen et al. · Microbial Genomics · 2021 · 41 citations · Full text

Life Sciences, Bioinformatics, Microbiology +17

Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies

Florence E. Buytaers, Assia Saltykova, Sarah Denayer et al. · Frontiers in Microbiology · 2021 · 39 citations · Full text

Life Sciences, Bioinformatics, Microbiology +17

Methods to assess the effect of meat processing on viability of Toxoplasma gondii: towards replacement of mouse bioassay by in vitro testing

Marieke Opsteegh, Cecile Dam‐Deisz, Paulo de Boer et al. · International Journal for Parasitology · 2020 · 32 citations · Full text

Agriculture, Food Science, Infectious Diseases +15