Tsu-Pei Chiu - Concepedia

Author

Tsu-Pei Chiu

University of Southern California ORCID

Also Known As

Chiu, Tsu-Pei, T. Chiu, T.K. Chiu, Tsu-Pei Chiu

Publications

818

Citations

H-Index

Concepts

All Affiliations

University of Southern California Columbia University Boston University

About

Tsu-Pei Chiu is an author at University of Southern California specializing in structural biology, medicine, and molecular biology.

Top Concepts

#	Concept	H-Index	Publications	Citations
1	Medicine	5	5	340
2	Molecular Biology	5	5	340
3	Structural Biology	5	5	340
4	Engineering	2	2	158
5	Natural Sciences	2	2	154

Tsu-Pei Chiu

Publications

761

Citations

H-Index

Page 1

	Year	Citations
DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding Tsu-Pei Chiu, Federico Comoglio, Tianyin Zhou, Bioinformatics	2015	187
Expanding the repertoire of DNA shape features for genome-scale studies of transcription factor binding Jinsen Li, Jared Sagendorf, Tsu-Pei Chiu, Nucleic Acids Research Structural BioinformaticsBiomolecular Structure PredictionGeneticsMolecular BiologyDna Shape Features	2017	113
Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein–DNA binding Satyanarayan Rao, Tsu-Pei Chiu, Judith F. Kribelbauer, Epigenetics & Chromatin	2018	93
Genome-wide prediction of minor-groove electrostatic potential enables biophysical modeling of protein–DNA binding Tsu-Pei Chiu, Satyanarayan Rao, Richard S. Mann, Nucleic Acids Research Biophysical ModelingEngineeringStructural BioinformaticsBiomolecular Structure PredictionMolecular Biology	2017	92
Predicting DNA structure using a deep learning method Jinsen Li, Tsu-Pei Chiu, Remo Rohs Nature Communications EngineeringDeep Dnashape MethodBiomolecular Structure PredictionStructural BioinformaticsGenetics	2024	66
Geometric deep learning of protein–DNA binding specificity Raktim Mitra, Jinsen Li, Jared Sagendorf, Nature Methods	2024	46
TFBSshape: an expanded motif database for DNA shape features of transcription factor binding sites Tsu-Pei Chiu, Beibei Xin, Nicholas Markarian, Nucleic Acids Research Structural BioinformaticsGeneticsMolecular BiologyDna Shape FeaturesGenomics	2019	41
Macrophages activated by hepatitis B virus have distinct metabolic profiles and suppress the virus via IL-1β to downregulate PPARα and FOXO3 Yumei Li, Yanwen Zhu, Shu Feng, Cell Reports	2022	37
Epigenetic competition reveals density-dependent regulation and target site plasticity of phosphorothioate epigenetics in bacteria Xiaolin Wu, Bo Cao, Patricia Aquino, Proceedings of the National Academy of Sciences	2020	34
Experimental maps of DNA structure at nucleotide resolution distinguish intrinsic from protein-induced DNA deformations Robert N. Azad, Dana Zafiropoulos, Douglas Ober, Nucleic Acids Research DnaStructural BioinformaticsBiomolecular Structure PredictionGeneticsDna Analysis	2018	28

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