Tsu-Pei Chiu

DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding

Tsu-Pei Chiu, Federico Comoglio, Tianyin Zhou et al. · Bioinformatics · 2015 · 187 citations · Full text

Expanding the repertoire of DNA shape features for genome-scale studies of transcription factor binding

Jinsen Li, Jared Sagendorf, Tsu-Pei Chiu et al. · Nucleic Acids Research · 2017 · 113 citations · Full text

Structural Bioinformatics, Biomolecular Structure Prediction, Genetics +25

Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein–DNA binding

Satyanarayan Rao, Tsu-Pei Chiu, Judith F. Kribelbauer et al. · Epigenetics & Chromatin · 2018 · 93 citations · Full text

Genome-wide prediction of minor-groove electrostatic potential enables biophysical modeling of protein–DNA binding

Tsu-Pei Chiu, Satyanarayan Rao, Richard S. Mann et al. · Nucleic Acids Research · 2017 · 92 citations · Full text

Biophysical Modeling, Engineering, Structural Bioinformatics +19

Predicting DNA structure using a deep learning method

Jinsen Li, Tsu-Pei Chiu, Remo Rohs · Nature Communications · 2024 · 66 citations · Full text

Engineering, Deep Dnashape Method, Biomolecular Structure Prediction +18