Satyanarayan Rao

Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein–DNA binding

Satyanarayan Rao, Tsu-Pei Chiu, Judith F. Kribelbauer et al. · Epigenetics & Chromatin · 2018 · 93 citations · Full text

Genome-wide prediction of minor-groove electrostatic potential enables biophysical modeling of protein–DNA binding

Tsu-Pei Chiu, Satyanarayan Rao, Richard S. Mann et al. · Nucleic Acids Research · 2017 · 92 citations · Full text

Biophysical Modeling, Engineering, Structural Bioinformatics +19

Cooperative binding between distant transcription factors is a hallmark of active enhancers

Satyanarayan Rao, Kami Ahmad, Srinivas Ramachandran · Molecular Cell · 2021 · 81 citations · Full text

Transcriptional Regulation, Active Enhancers, Distant Transcription Factors +11

Transcription factor–nucleosome dynamics from plasma cfDNA identifies ER-driven states in breast cancer

Satyanarayan Rao, Amy Han, Alexis Zukowski et al. · Science Advances · 2022 · 28 citations · Full text

Physicochemical models of protein–DNA binding with standard and modified base pairs

Tsu-Pei Chiu, Satyanarayan Rao, Remo Rohs · Proceedings of the National Academy of Sciences · 2023 · 24 citations · Full text