Pedro Alves

Architecture of the human regulatory network derived from ENCODE data

Mark Gerstein, Anshul Kundaje, Manoj Hariharan et al. · Nature · 2012 · 1.5K citations · Full text

Integrative Analysis of the <i>Caenorhabditis elegans</i> Genome by the modENCODE Project

Mark Gerstein, Zhi John Lu, Eric L. Van Nostrand et al. · Science · 2010 · 1K citations

AlleleSeq: analysis of allele‐specific expression and binding in a network framework

Joel Rozowsky, Alexej Abyzov, Jing Wang et al. · Molecular Systems Biology · 2011 · 353 citations · Full text

Diverse transcription factor binding features revealed by genome-wide ChIP-seq in <i>C. elegans</i>

Wei Niu, Zhi John Lu, Mei Zhong et al. · Genome Research · 2010 · 251 citations · Full text

A computational approach toward label-free protein quantification using predicted peptide detectability

Haixu Tang, Randy J. Arnold, Pedro Alves et al. · Bioinformatics · 2006 · 179 citations