Integrative Analysis of the <i>Caenorhabditis elegans</i> Genome by the modENCODE Project

Mark Gerstein, Zhi John Lu, Eric L. Van Nostrand, +126

Science

Coexpression Networks Implicate Human Midfetal Deep Cortical Projection Neurons in the Pathogenesis of Autism

A. Jeremy Willsey, Stephan Sanders, Mingfeng Li, +32

Cell

Developmental BiologyBrain StructureDevelopmental Cognitive NeuroscienceSyndromic AutismAutism +6

The autism-associated chromatin modifier CHD8 regulates other autism risk genes during human neurodevelopment

Justin Cotney, Rebecca Muhle, Stephan Sanders, +16

Nature Communications

A Genome-Scale Resource for In Vivo Tag-Based Protein Function Exploration in C. elegans

Mihail Sarov, John I. Murray, Kristin Schanze, +24

Cell

Functional GenomicsTranslational BioinformaticsInteractomicsMedicineNatural Sciences +11

Transcription Activation at Class II CAP-Dependent Promoters: Two Interactions between CAP and RNA Polymerase

Wei Niu, Young-Gyu Kim, Gregory Tau, +2

Cell

Transcriptional RegulationNatural SciencesTranscription RegulationRna PolymeraseGene Regulation +8

Diverse transcription factor binding features revealed by genome-wide ChIP-seq in <i>C. elegans</i>

Wei Niu, Zhi John Lu, Mei Zhong, +15

Genome Research

Comparative analysis of regulatory information and circuits across distant species

Alan P. Boyle, Carlos L. Araya, Cathleen Brdlik, +37

Nature

Bacterial promoter architecture: subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase alpha subunit

Shawn T. Estrem, Wilma Ross, Tamás Gaál, +4

Genes & Development

Genome-Wide Identification of Binding Sites Defines Distinct Functions for Caenorhabditis elegans PHA-4/FOXA in Development and Environmental Response

Mei Zhong, Wei Niu, Zhi John Lu, +19

PLoS Genetics

Transcription Factor Pha-4GeneticsGenomic MechanismMolecular GeneticsGene Regulatory Network +18

Regulatory analysis of the C. elegans genome with spatiotemporal resolution

Carlos L. Araya, Trupti Kawli, Anshul Kundaje, +15

Nature

GeneticsGenomic MechanismTranscriptomics TechnologyRegulatory BindingMolecular Genetics +19