Ricardo O. Ramirez Flores

decoupleR: ensemble of computational methods to infer biological activities from omics data

Pau Badia-i-Mompel, Jesús Vélez Santiago, Jana M. Braunger et al. · Bioinformatics Advances · 2022 · 1K citations · Full text

Life Sciences, Bioinformatics, Systems Biology +11

Spatial multi-omic map of human myocardial infarction

Christoph Kuppe, Ricardo O. Ramirez Flores, Zhijian Li et al. · Nature · 2022 · 685 citations · Full text

Life Sciences, Cardiology, Molecular Biology +17

Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data

Daniel Dimitrov, Dénes Türei, Martín Garrido‐Rodríguez et al. · Nature Communications · 2022 · 586 citations · Full text

Life Sciences, Bioinformatics, Cell Biology +16

Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities

Sophia Müller‐Dott, Eirini Tsirvouli, Miguél Vázquez et al. · Nucleic Acids Research · 2023 · 325 citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +13

Explainable multiview framework for dissecting spatial relationships from highly multiplexed data

Jovan Tanevski, Ricardo O. Ramirez Flores, Attila Gábor et al. · Genome biology · 2022 · 263 citations · Full text

Life Sciences, Bioinformatics, Cancer Biology +17