Surag Nair

GENCODE: reference annotation for the human and mouse genomes in 2023

Adam Frankish, Sílvia Carbonell Sala, Mark Diekhans et al. · Nucleic Acids Research · 2022 · 588 citations · Full text

Technical Note on Transcription Factor Motif Discovery from Importance Scores (TF-MoDISco) version 0.5.6.5

Avanti Shrikumar, Katherine Tian, Žiga Avsec et al. · arXiv (Cornell University) · 2018 · 175 citations · Full text

Version V0.5.6.5, Engineering, Genetics +25

Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays

Rajiv Movva, Peyton Greenside, Georgi K. Marinov et al. · PLoS ONE · 2019 · 95 citations · Full text

Genetics, Molecular Genetics, Dna Sequences +20

Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts

Surag Nair, Daniel Sunwook Kim, Jacob Perricone et al. · Bioinformatics · 2019 · 95 citations · Full text

Integrative single-cell analysis of cardiogenesis identifies developmental trajectories and non-coding mutations in congenital heart disease

Mohamed Ameen, Laksshman Sundaram, Mengcheng Shen et al. · Cell · 2022 · 94 citations · Full text

Cardiomyopathy, Developmental Biology, Cardiac Reprogramming +9