Lisa Barros de Andrade e Sousa

Kinetics of <i>Xist</i> -induced gene silencing can be predicted from combinations of epigenetic and genomic features

Lisa Barros de Andrade e Sousa, Iris H. Jonkers, Laurène Syx et al. · Genome Research · 2019 · 55 citations · Full text

Life Sciences, Genetics, Molecular Biology +15

Probe set selection for targeted spatial transcriptomics

Louis B. Kuemmerle, Malte D. Luecken, Alexandra B. Firsova et al. · Nature Methods · 2024 · 31 citations · Full text

Life Sciences, Cell Biology, Molecular Biology +15

Systematic evaluation of cell-type deconvolution pipelines for sequencing-based bulk DNA methylomes

Yunhee Jeong, Lisa Barros de Andrade e Sousa, Dominik Thalmeier et al. · Briefings in Bioinformatics · 2022 · 27 citations · Full text

Life Sciences, Bioinformatics, Cell Biology +16

Improved prediction of bacterial CRISPRi guide efficiency from depletion screens through mixed-effect machine learning and data integration

Yanying Yu, Sandra Gawlitt, Lisa Barros de Andrade e Sousa et al. · Genome biology · 2024 · 26 citations · Full text

Life Sciences, Bioinformatics, Genetics +17

Probe set selection for targeted spatial transcriptomics

Louis B. Kuemmerle, Malte D. Luecken, Alexandra B. Firsova et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2022 · 24 citations · Full text

Life Sciences, Cell Biology, Molecular Biology +15