Christoph Feinauer

Fast and Accurate Multivariate Gaussian Modeling of Protein Families: Predicting Residue Contacts and Protein-Interaction Partners

Carlo Baldassi, Marco Zamparo, Christoph Feinauer et al. · PLoS ONE · 2014 · 154 citations · Full text

Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria

Alejandro Couce, Larissa Viraphong Caudwell, Christoph Feinauer et al. · Proceedings of the National Academy of Sciences · 2017 · 107 citations · Full text

Improving Contact Prediction along Three Dimensions

Christoph Feinauer, Marcin J. Skwark, Andrea Pagnani et al. · PLoS Computational Biology · 2014 · 95 citations · Full text

Engineering, Machine Learning, Contact Prediction +25

Inter-Protein Sequence Co-Evolution Predicts Known Physical Interactions in Bacterial Ribosomes and the Trp Operon

Christoph Feinauer, Hendrik Szurmant, Martin Weigt et al. · PLoS ONE · 2016 · 64 citations · Full text

Partner Proteins, Protein Assembly, Structural Bioinformatics +21

TULIP: A transformer-based unsupervised language model for interacting peptides and T cell receptors that generalizes to unseen epitopes

Barthelemy Meynard-Piganeau, Christoph Feinauer, Martin Weigt et al. · Proceedings of the National Academy of Sciences · 2024 · 46 citations · Full text

Structured Prediction, Engineering, Machine Learning +18