Marcin J. Skwark

Nucleotide Transformer: building and evaluating robust foundation models for human genomics

Hugo Dalla-Torre, Liam Gonzalez, Javier Mendoza‐Revilla et al. · Nature Methods · 2024 · 267 citations · Full text

SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology

Håkan Viklund, Andreas Bernsel, Marcin J. Skwark et al. · Bioinformatics · 2008 · 238 citations · Full text

The Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

Hugo Dalla-Torre, Liam Gonzalez, Javier Mendoza‐Revilla et al. · 2023 · 186 citations · Full text

Nucleotide Transformer, Engineering, Human Genomics +25

Improved Contact Predictions Using the Recognition of Protein Like Contact Patterns

Marcin J. Skwark, Daniele Raimondi, Mirco Michel et al. · PLoS Computational Biology · 2014 · 161 citations · Full text

Engineering, Machine Learning, Structural Bioinformatics +21

PconsFold: improved contact predictions improve protein models

Mirco Michel, Sikander Hayat, Marcin J. Skwark et al. · Bioinformatics · 2014 · 110 citations · Full text