Yi Xiong

DTI-CDF: a cascade deep forest model towards the prediction of drug-target interactions based on hybrid features

Yanyi Chu, Aman Chandra Kaushik, Xiangeng Wang et al. · Briefings in Bioinformatics · 2019 · 208 citations

Drug Target, Engineering, Machine Learning +21

GOLabeler: improving sequence-based large-scale protein function prediction by learning to rank

Ronghui You, Zihan Zhang, Yi Xiong et al. · Bioinformatics · 2018 · 201 citations · Full text

A transformer-based model to predict peptide–HLA class I binding and optimize mutated peptides for vaccine design

Yanyi Chu, Yan Zhang, Qiankun Wang et al. · Nature Machine Intelligence · 2022 · 175 citations · Full text

Vaccination, Cross-protection, Peptide Library +9

MDF-SA-DDI: predicting drug–drug interaction events based on multi-source drug fusion, multi-source feature fusion and transformer self-attention mechanism

Shenggeng Lin, Yanjing Wang, Lingfeng Zhang et al. · Briefings in Bioinformatics · 2021 · 167 citations

NetGO: improving large-scale protein function prediction with massive network information

Ronghui You, Shuwei Yao, Yi Xiong et al. · Nucleic Acids Research · 2019 · 160 citations · Full text

Engineering, Machine Learning, Molecular Biology +23