Single-cell transcriptomic analysis of Alzheimer’s disease

Hansruedi Mathys, José Dávila-Velderrain, Zhuyu Peng, +13

Nature

Neurodegenerative DiseasesMolecular NeuroscienceAlzheimer's DiseaseSingle Cell SequencingMedicine +5

Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration

Madhvi Menon, Shahin Mohammadi, José Dávila-Velderrain, +8

Nature Communications

Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation

Hyeseung Lee, Robert J. Fenster, S. Sebastian Pineda, +12

Neuron

Molecular NeuroscienceMitochondrial BiogenesisMitochondrial FunctionInnate Immune SystemImmunology +6

Kavosh: a new algorithm for finding network motifs

Zahra Razaghi‐Moghadam, Hayedeh Ahrabian, Elahe Elahi, +6

BMC Bioinformatics

Single-cell multi-cohort dissection of the schizophrenia transcriptome

W. Brad Ruzicka, Shahin Mohammadi, John F. Fullard, +213

Science

NeuropsychologyGeneticsSchizophrenia TranscriptomeSocial SciencesSingle-cell Dissection +16

Network Similarity Decomposition (NSD): A Fast and Scalable Approach to Network Alignment

Giorgos Kollias, Shahin Mohammadi, Ananth Grama

IEEE Transactions on Knowledge and Data Engineering

Cluster ComputingGlobal AlignmentEngineeringSeed Global AlignmentsNetwork Analysis +22

Reconstruction of Cell-type-Specific Interactomes at Single-Cell Resolution

Shahin Mohammadi, José Dávila-Velderrain, Manolis Kellis

Cell Systems

Single-cell ResolutionImmunologyMultiomicsCytoskeletonScinet Package +19

A multiresolution framework to characterize single-cell state landscapes

Shahin Mohammadi, José Dávila-Velderrain, Manolis Kellis

Nature Communications

A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex

Louise A. Huuki-Myers, Abby Spangler, Nicholas J. Eagles, +232

Science

NeurogenomicsHuman Prefrontal CortexBrain MappingBrain OrganizationSpatial Omics +18

Single-cell dissection of schizophrenia reveals neurodevelopmental-synaptic axis and transcriptional resilience

W. Brad Ruzicka, Shahin Mohammadi, José Dávila-Velderrain, +4

NeuropsychologyCellular NeurobiologySocial SciencesSingle-cell DissectionPsychiatric Genetics +17