Concepedia

Squidiff: predicting cellular development and responses to perturbations using a diffusion model

Siyu He, Yuefei Zhu, Daniel Naveed Tavakol, Haotian Ye, Yeh‐Hsing Lao, Cong Xu, Shradha Chauhan, Guy Garty, Raju Tomer, Gordana Vunjak‐Novakovic,

Nature Methods · 2025 · 19 citations · 37 references

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37

High-Resolution Image Synthesis with Latent Diffusion Models

Robin Rombach, Andreas Blattmann, Dominik Lorenz et al. · 2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) · 2022 · 13.7K citations

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Reversed graph embedding resolves complex single-cell trajectories

Xiaojie Qiu, Qi Mao, Ying Tang et al. · Nature Methods · 2017 · 5.4K citations · Full text

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PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

F. Alexander Wolf, Fiona Hamey, Mireya Plass et al. · Genome biology · 2019 · 1.8K citations · Full text

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Nanog safeguards pluripotency and mediates germline development

Ian Chambers, José Silva, Douglas Colby et al. · Nature · 2007 · 1.5K citations

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Splatter: simulation of single-cell RNA sequencing data

Luke Zappia, Belinda Phipson, Alicia Oshlack · Genome biology · 2017 · 1.1K citations · Full text

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