PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

F. Alexander Wolf, Fiona Hamey, Mireya Plass, +6

Genome biology

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

Christine G. Elsik, Ross L. Tellam, Kim C. Worley, +303

Science

Comparative GenomicsGeneticsCattle GenomeSevenfold CoverageLivestock Health +23

Loss of a mammalian circular RNA locus causes miRNA deregulation and affects brain function

Monika Piwecka, Petar Glažar, Luis R. Hernández-Miranda, +17

Science

Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics

Mireya Plass, Jordi Solana, F. Alexander Wolf, +7

Science

Control of alternative splicing through siRNA-mediated transcriptional gene silencing

Mariano Alló, Valeria Buggiano, Juan Pablo Fededa, +10

Nature Structural & Molecular Biology

Sirna-mediated Transcriptional GeneTranscriptional RegulationGeneticsRna SplicingRna Biology +5

DGCR8 HITS-CLIP reveals novel functions for the Microprocessor

Sara Macías, Mireya Plass, Agata Stajuda, +3

Nature Structural & Molecular Biology

Hardware SecurityEngineeringHardware AccelerationElectronic Design AutomationXeon Phi +4

Deciphering 3′ss Selection in the Yeast Genome Reveals an RNA Thermosensor that Mediates Alternative Splicing

Markus Meyer, Mireya Plass, Jorge Pérez‐Valle, +2

Molecular Cell

Transcriptional RegulationYeast Genome RevealsGeneticsNatural SciencesRna Splicing +10

The Microprocessor controls the activity of mammalian retrotransposons

Sara R. Heras, Sara Macías, Mireya Plass, +5

Nature Structural & Molecular Biology

BiologyKnockout MouseNatural SciencesMechanism (Biology)Mammalian Retrotransposons +4

ASTD: The Alternative Splicing and Transcript Diversity database

Gautier Koscielny, Vincent Le Texier, Chellappa Gopalakrishnan, +25

Genomics

Functional GenomicsGeneticsSequence AnalysisTranscriptomics TechnologyGenomics +4

DGCR8 Acts as an Adaptor for the Exosome Complex to Degrade Double-Stranded Structured RNAs

Sara Macías, Ross A. Cordiner, Philippe Gautier, +2

Molecular Cell