Concepedia

Leveraging ancestral sequence reconstruction for protein representation learning

Dana S. Matthews, Matthew A. Spence, Adam C. Mater, James Nichols, Sacha B. Pulsford, M. Sandhu, Joe A. Kaczmarski, C.M. Miton, Nobuhiko Tokuriki, Colin J. Jackson

Nature Machine Intelligence · 2024 · 13 citations · 77 references

DOI

References

77

AI-Assisted Pipeline for Dynamic Generation of Trustworthy Health Supplement Content at Scale

DROPS (Schloss Dagstuhl – Leibniz Center for Informatics) · 2018 · 45.3K citations · Full text

ModelFinder: fast model selection for accurate phylogenetic estimates

Subha Kalyaanamoorthy, Bùi Quang Minh, Thomas K. F. Wong et al. · Nature Methods · 2017 · 17.4K citations

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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

Bùi Quang Minh, Heiko A. Schmidt, Olga Chernomor et al. · Molecular Biology and Evolution · 2020 · 15K citations · Full text

PAML 4: Phylogenetic Analysis by Maximum Likelihood

Molecular Biology and Evolution · 2007 · 14.3K citations · Full text

APE: Analyses of Phylogenetics and Evolution in R language

Emmanuel Paradis, Julien Claude, Korbinian Strimmer · Bioinformatics · 2004 · 12.3K citations · Full text