Concepedia

Pooled CRISPR screens with joint single-nucleus chromatin accessibility and transcriptome profiling

Rachel Yan, Alba Corman, Lyla Katgara, Wang Xiao, Xinhe Xue, Zoran Gajic, Richard Sam, Michael Farid, Samuel M. Friedman, Ivan Raimondi,

Nature Biotechnology · 2024 · 16 citations · 73 references

DOI

Concepts

References

73

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

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Cutadapt removes adapter sequences from high-throughput sequencing reads

Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text

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featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

Yang Liao, Gordon K. Smyth, Wei Shi · Bioinformatics · 2013 · 29.1K citations · Full text

, , +14

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 23K citations · Full text

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