Survival strategies and assembly mechanisms of microbial communities in petroleum-contaminated soils

DADA2: High-resolution sample inference from Illumina amplicon data

Benjamin J. Callahan, Paul J. McMurdie, Michael Rosen et al. · Nature Methods · 2016 · 36.3K citations

Life Sciences, Bioinformatics, Genetics +9

Fast and sensitive protein alignment using DIAMOND

Benjamin Buchfink, Chao Xie, Daniel H. Huson · Nature Methods · 2014 · 15.2K citations

Life Sciences, Biochemistry, Molecular Biology +8

CD-HIT: accelerated for clustering the next-generation sequencing data

LiMin Fu, Beifang Niu, Zhengwei Zhu et al. · Bioinformatics · 2012 · 11.8K citations · Full text

Life Sciences, Bioinformatics, High-performance Computing +12

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct <i>de Bruijn</i> graph

Dinghua Li, Chi-Man Liu, Ruibang Luo et al. · Bioinformatics · 2015 · 10K citations · Full text

Life Sciences, Bioinformatics, Genome Assembly +11

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

Chen Xie, Xizeng Mao, Jiaju Huang et al. · Nucleic Acids Research · 2011 · 5.5K citations · Full text

Life Sciences, Bioinformatics, Genetics +15