Concepedia

XgCPred: Cell type classification using XGBoost-CNN integration and exploiting gene expression imaging in single-cell RNAseq data

Anas Abu-Doleh, Amjed Al Fahoum

Computers in Biology and Medicine · 2024 · 25 citations · 28 references

Concepts

Life SciencesBioinformaticsCell BiologyGene ExpressionGene Expression AnalysisTranscriptomicsCell Type AnnotationGene Expression ImagingSingle-cell AnalysisSingle-cell GenomicsSingle-cell Rna Sequencing AnalysisSingle-cell TranscriptomicsCell Type InferenceCell Type-specific Expression QuantificationCell-type IdentificationCell-type Signature ExtractionSingle-cell Gene Expression ProfilingSingle-cell Rna SequencingSingle-cell Rna Sequencing Cell Type Annotation

References

28

Integrating single-cell transcriptomic data across different conditions, technologies, and species

Andrew Butler, Paul Hoffman, Peter Smibert et al. · Nature Biotechnology · 2018 · 14.7K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +14

On a Method to Measure Supervised Multiclass Model’s Interpretability: Application to Degradation Diagnosis (Short Paper)

Dagstuhl Research Online Publication Server · 2024 · 13.3K citations · Full text

Computing, Computer Science, Data Science +17

Massively parallel digital transcriptional profiling of single cells

Grace Zheng, Jessica M. Terry, Phillip Belgrader et al. · Nature Communications · 2017 · 7.8K citations · Full text

Life Sciences, Cell Biology, Molecular Biology +14

XGBoost: A Scalable Tree Boosting System

arXiv (Cornell University) · 2016 · 7.1K citations · Full text

Computing, Computer Science, Data Science +16

KEGG for linking genomes to life and the environment

Minoru Kanehisa, Michihiro Araki, Susumu Goto et al. · Nucleic Acids Research · 2007 · 7.1K citations · Full text

Life Sciences, Bioinformatics, Systems Biology +17