Concepedia

Cell Type Inference

Cell Type Inference is a computational method that distinguishes specific cellular identities by integrating gene expression profiles with reference datasets to assign cell types to individual cells within heterogeneous transcriptomic samples.

343

Publications

40.9K

Citations

2K

Authors

643

Institutions

Publications per year

2017–2026

283

Variants

Cell Type Assignment

Parents

Publications

343

Determining cell type abundance and expression from bulk tissues with digital cytometry

Aaron M. Newman, Chloé B. Steen, Chih Long Liu et al. · Nature Biotechnology · 2019 · 4.9K citations

, , +16

xCell: digitally portraying the tissue cellular heterogeneity landscape

Dvir Aran, Zicheng Hu, Atul J. Butte · Genome biology · 2017 · 4.7K citations · Full text

, , +15

A single–cell type transcriptomics map of human tissues

Max Karlsson, Cheng Zhang, Loren Méar et al. · Science Advances · 2021 · 1.8K citations · Full text

, , +16

Simultaneous enumeration of cancer and immune cell types from bulk tumor gene expression data

Julien Racle, Kaat de Jonge, Petra Baumgaertner et al. · eLife · 2017 · 1.4K citations · Full text

, , +17

Robust decomposition of cell type mixtures in spatial transcriptomics

Dylan Cable, Evan Murray, Luli S. Zou et al. · Nature Biotechnology · 2021 · 1.4K citations · Full text

, , +17

1–5 of 343

Authors

2K

  1. EZ
    Evan Z. Macosko

    Broad Institute, United States

    7 publications · 2.1K citations

    7

    h-index

  2. ES
    Ed S. Lein

    Allen Institute, United States

    7 publications · 323 citations

    7

    h-index

  3. RH
    Richard H. Scheuermann

    J. Craig Venter Institute, United States

    7 publications · 328 citations

    7

    h-index

  4. RA
    Rafael A. Irizarry

    Johns Hopkins University, United States

    6 publications · 1.8K citations

    6

    h-index

  5. JA
    Jeremy A. Miller

    Allen Institute, United States

    6 publications · 305 citations

    6

    h-index

1–5 of 2K

Institutions

643

  1. Harvard University

    Cambridge, United States

    18 h-index

    89 publications

    6.4K citations

  2. Broad Institute

    Cambridge, United States

    17 h-index

    81 publications

    14.9K citations

  3. University of California, Los Angeles

    Los Angeles, United States

    13 h-index

    52 publications

    7.4K citations

  4. University of Washington

    Seattle, United States

    13 h-index

    49 publications

    5.5K citations

  5. Dana-Farber Cancer Institute

    Boston, United States

    13 h-index

    36 publications

    7K citations

  6. University of California San Diego

    San Diego, United States

    12 h-index

    35 publications

    2.1K citations

  7. Wellcome Sanger Institute

    Cambridge, United Kingdom

    11 h-index

    46 publications

    26.8K citations

  8. Emory University

    Atlanta, United States

    11 h-index

    22 publications

    1.2K citations

1–8 of 643

Venues

  1. Nature Communications

    26 publications · 5.5K citations

    23

    h-index

  2. Bioinformatics

    30 publications · 3K citations

    23

    h-index

  3. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 48 publications · 1.8K citations

    23

    h-index

  4. Genome biology

    15 publications · 5.4K citations

    16

    h-index

  5. BMC Bioinformatics

    12 publications · 772 citations

    12

    h-index

1–5