Nature Communications · 2024 · 13 citations · 55 references
Life SciencesMicrobiologyMolecular BiologyGene ExpressionProtein TranslationTranscriptomicsRibosome BiogenesisRibosome ProfilingTranslation ControlTranslation In ProkaryotesTranslation RegulationTranslational RegulationBacillus SporulationBacillus SubtilisParalogsProtein Subcellular LocalizationRibosome Profiling Data AnalysisSubcellular Protein LocalizationTranslational DynamicsZinc Binding Proteins
The transcriptional control of sporulation in Bacillus subtilis is reasonably well understood, but its translational control is underexplored. Here, we use RNA-seq, ribosome profiling and fluorescence microscopy to study the translational dynamics of B. subtilis sporulation. We identify two events of translation silencing and describe spatiotemporal changes in subcellular localization of ribosomes during sporulation. We investigate the potential regulatory role of ribosomes during sporulation using a strain lacking zinc-independent paralogs of three zinc-dependent ribosomal proteins (L31, L33 and S14). The mutant strain exhibits delayed sporulation, reduced germination efficiency, dysregulated translation of metabolic and sporulation-related genes, and disruptions in translation silencing, particularly in late sporulation.
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Fiji: an open-source platform for biological-image analysis
Johannes Schindelin, Ignacio Arganda‐Carreras, Erwin Frise et al. · Nature Methods · 2012 · 70.9K citations
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text