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Post-translational modification-centric base editor screens to assess phosphorylation site functionality in high throughput

Patrick H. Kennedy, Amin Alborzian Deh Sheikh, Matthew Balakar, Alexander C. Jones, Meagan E. Olive, Mudra Hegde, Maria I. Matias, Natan Pirete, Rajan A. Burt, Jonathan M. Levy,

Nature Methods · 2024 · 21 citations · 59 references

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59

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha et al. · Proceedings of the National Academy of Sciences · 2005 · 56.7K citations · Full text

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g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)

Uku Raudvere, Liis Kolberg, Ivan Kuzmin et al. · Nucleic Acids Research · 2019 · 5.4K citations · Full text

, , +10

PhosphoSitePlus, 2014: mutations, PTMs and recalibrations

Peter Hornbeck, Bin Zhang, Beth Murray et al. · Nucleic Acids Research · 2014 · 3.5K citations · Full text

, , +16

MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens

Wei Li, Han Xu, Tengfei Xiao et al. · Genome biology · 2014 · 2.8K citations · Full text

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Computational correction of copy number effect improves specificity of CRISPR–Cas9 essentiality screens in cancer cells

Robin M. Meyers, Jordan Bryan, James M. McFarland et al. · Nature Genetics · 2017 · 2.2K citations · Full text

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