Advanced Science · 2023 · 19 citations · 52 references
MedicineOncologyPharmacologyMolecular OncologyTranslational OncologyTumor MicroenvironmentCancer Stem Cell BiologyCancer Stem Cell MaintenanceCancer Stem CellsHypoxia AdaptationStem Cell TumorigenicityTumor Suppressor GenesCancer Stem Cell SurvivalGlioblastoma Drug TherapyGlioblastoma HypoxiaGlioblastoma Stem CellsHypoxia-induced StemnessHypoxia-mediated StemnessInhibitor SpecificityTumor Microenvironment Hypoxia
Glioblastoma (GBM) is a lethal cancer characterized by hypervascularity and necrosis associated with hypoxia. Here, it is found that hypoxia preferentially induces the actin-binding protein, Transgelin (TAGLN), in GBM stem cells (GSCs). Mechanistically, TAGLN regulates HIF1α transcription and stabilizes HDAC2 to deacetylate p53 and maintain GSC self-renewal. To translate these findings into preclinical therapeutic paradigm, it is found that sodium valproate (VPA) is a specific inhibitor of TAGLN/HDAC2 function, with augmented efficacy when combined with natural borneol (NB) in vivo. Thus, TAGLN promotes cancer stem cell survival in hypoxia and informs a novel therapeutic paradigm.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang, Tao Liu, Clifford A. Meyer et al. · Genome biology · 2008 · 19.9K citations · Full text
MEME SUITE: tools for motif discovery and searching
Timothy L. Bailey, Mikael Bodén, Fabian A. Buske et al. · Nucleic Acids Research · 2009 · 11.5K citations · Full text
Comprehensive genomic characterization defines human glioblastoma genes and core pathways