Nature Communications · 2023 · 44 citations · 68 references
MedicineMolecular MedicineOncologyEpigenomicsPrecision MedicinePrecision OncologyBiomarker DiscoveryCancer BiomarkersDna Methylation ProfilingEpigenetic Biomarker DiscoveryEpigenetic BiomarkersLiquid BiopsyAberrant Dna MethylationDna Methylation PatternsLiquid Biopsy BiomarkersLiquid Biopsy DiagnosticsLiquid Biopsy Epigenetic BiomarkersLiquid Biopsy Epigenetic MarkersLiquid Biopsy EpigeneticsMeningioma Recurrence
Recurrence of meningiomas is unpredictable by current invasive methods based on surgically removed specimens. Identification of patients likely to recur using noninvasive approaches could inform treatment strategy, whether intervention or monitoring. In this study, we analyze the DNA methylation levels in blood (serum and plasma) and tissue samples from 155 meningioma patients, compared to other central nervous system tumor and non-tumor entities. We discover DNA methylation markers unique to meningiomas and use artificial intelligence to create accurate and universal models for identifying and predicting meningioma recurrence, using either blood or tissue samples. Here we show that liquid biopsy is a potential noninvasive and reliable tool for diagnosing and predicting outcomes in meningioma patients. This approach can improve personalized management strategies for these patients.
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GENCODE reference annotation for the human and mouse genomes
Adam Frankish, Mark Diekhans, Anne-Maud Ferreira et al. · Nucleic Acids Research · 2018 · 3.5K citations · Full text
DNA methylation-based classification of central nervous system tumours
David Capper, David Jones, Martin Sill et al. · Nature · 2018 · 3.1K citations · Full text