Concepedia

Evaluation of the contribution of shotgun metagenomics in the microbiological diagnosis of liver abscesses

Hadrien Kimseng, G. Rossi, Maxime Danjean, Bryan Jimenez-Araya, Camille Chaligné, Adrien Galy, Bérénice Souhail, Frédéric Bert, Véronique Leflon, Vincent Fihman,

Journal of Infection · 2023 · 11 citations · 23 references

DOI

Concepts

References

23

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text

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Using SPAdes De Novo Assembler

Andrey D. Prjibelski, Dmitry Antipov, Dmitry Meleshko et al. · Current Protocols in Bioinformatics · 2020 · 3.5K citations

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Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis

Michael R. Wilson, Hannah A. Sample, Kelsey C. Zorn et al. · New England Journal of Medicine · 2019 · 1K citations · Full text

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Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid

Steve Miller, Samia N. Naccache, Erik Samayoa et al. · Genome Research · 2019 · 579 citations · Full text

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Pyogenic Hepatic Abscess

Chih-Jen Huang, Henry A. Pitt, Pamela A. Lipsett et al. · Annals of Surgery · 1996 · 523 citations · Full text

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