Concepedia

NanopoReaTA: a user-friendly tool for nanopore-seq real-time transcriptional analysis

Anna Wierczeiko, Stefan Pastore, Stefan Mündnich, Anne Busch, Vincent Dietrich, Mark Helm, Tamer Butto, Susanne Gerber

Bioinformatics · 2023 · 17 citations · 9 references

DOIFull text

Open access

Abstract

Github https://github.com/AnWiercze/NanopoReaTA; Zenodo https://doi.org/10.5281/zenodo.8099825.

References

9

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 94.7K citations · Full text

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

Yang Liao, Gordon K. Smyth, Wei Shi · Bioinformatics · 2013 · 27.4K citations · Full text

Minimap2: pairwise alignment for nucleotide sequences

Heng Li · Bioinformatics · 2018 · 15.5K citations · Full text

Salmon provides fast and bias-aware quantification of transcript expression

Rob Patro, Geet Duggal, Michael I. Love et al. · Nature Methods · 2017 · 12.7K citations · Full text

RSeQC: quality control of RNA-seq experiments

Liguo Wang, Shengqin Wang, Wei Li · Bioinformatics · 2012 · 2.9K citations · Full text