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Prodigal: prokaryotic gene recognition and translation initiation site identification

Doug Hyatt, Gwo-Liang Chen, Philip LoCascio et al. · BMC Bioinformatics · 2010 · 13.1K citations · Full text

Life Sciences, Bioinformatics, Microbiology +13

Accelerated Profile HMM Searches

Sean R. Eddy · PLoS Computational Biology · 2011 · 7.5K citations · Full text

Life Sciences, Bioinformatics, Computer Science +17

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

Karthik Anantharaman, Christopher T. Brown, Laura Hug et al. · Nature Communications · 2016 · 1.2K citations · Full text

Life Sciences, Biology, Microbiology +16

Lactate-Utilizing Bacteria, Isolated from Human Feces, That Produce Butyrate as a Major Fermentation Product

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Life Sciences, Microbiology, Bacteriology +11

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

Nicola Segata, Daniela Börnigen, Xochitl C. Morgan et al. · Nature Communications · 2013 · 887 citations · Full text

Life Sciences, Evolutionary Biology, Microbiology +13