Concepedia

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

Nicola Segata, Daniela Börnigen, Xochitl C. Morgan, Curtis Huttenhower

Nature Communications · 2013 · 887 citations · 53 references

DOIFull text

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Concepts

References

53

MUSCLE: multiple sequence alignment with high accuracy and high throughput

R. C. Edgar · Nucleic Acids Research · 2004 · 46.5K citations · Full text

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Search and clustering orders of magnitude faster than BLAST

R. C. Edgar · Bioinformatics · 2010 · 21.7K citations · Full text

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FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price, Paramvir Dehal, Adam P. Arkin · PLoS ONE · 2010 · 16K citations · Full text

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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis · Bioinformatics · 2006 · 15.9K citations · Full text

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Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

Todd Z. DeSantis, Philip Hugenholtz, N. Larsen et al. · Applied and Environmental Microbiology · 2006 · 11.2K citations · Full text

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